STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mnmCtRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC. (438 aa)    
Predicted Functional Partners:
pgdA
Peptidoglycan deacetylase.
 
     0.945
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
  
 
 0.906
KXK36235.1
Hypothetical protein.
 
    0.879
KXK35468.1
Dolichyl-phosphate-mannose-protein mannosyltransferase.
 
     0.832
KXK34759.1
Hypothetical protein.
 
     0.724
wbpD
UDP-2-acetamido-3-amino-2, 3-dideoxy-D-glucuronate N-acetyltransferase.
 
     0.669
KXK35469.1
Hypothetical protein.
       0.625
KXK35470.1
Hypothetical protein.
       0.625
KXK37052.1
Hypothetical protein.
   
 
 0.620
KXK35462.1
Undecaprenyl-phosphate mannosyltransferase.
 
     0.617
Your Current Organism:
Omnitrophica bacterium OLB16
NCBI taxonomy Id: 1617433
Other names: O. bacterium OLB16, candidate division OP3 bacterium OLB16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.