STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXK34171.1Phytanoyl-CoA dioxygenase (PhyH). (248 aa)    
Predicted Functional Partners:
KXK38534.1
Phytanoyl-CoA dioxygenase (PhyH).
  
     0.775
fadA
3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.772
glpC
Anaerobic glycerol-3-phosphate dehydrogenase subunit C.
    
  0.604
KXK38630.1
Putative FAD-linked oxidoreductase.
    
  0.604
fas5
Putative oxidoreductase ORF5 in fasciation locus.
    
  0.604
argE
Acetylornithine deacetylase.
       0.468
gnl
Gluconolactonase precursor.
  
     0.454
KXK34172.1
Hypothetical protein.
       0.438
ppsB
Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsB.
  
 0.430
KXK36681.1
Hypothetical protein; MlrC C-terminus.
  
     0.426
Your Current Organism:
Omnitrophica bacterium OLB16
NCBI taxonomy Id: 1617433
Other names: O. bacterium OLB16, candidate division OP3 bacterium OLB16
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