STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fixJTranscriptional regulatory protein FixJ. (295 aa)    
Predicted Functional Partners:
yycF
Transcriptional regulatory protein YycF.
 
0.988
fliN
Flagellar motor switch protein FliN.
  
 
 0.986
phoB
Phosphate regulon transcriptional regulatory protein PhoB.
 
 0.966
flgB
Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
  
  
 0.963
fliG
Flagellar motor switch protein FliG.
  
  
 0.961
pomA
Chemotaxis protein PomA.
  
    0.961
phoR
Alkaline phosphatase synthesis sensor protein PhoR.
 
 0.956
zraS_11
Sensor protein ZraS.
 
 0.955
zraS_2
Sensor protein ZraS.
 
 0.946
srrA_1
Transcriptional regulatory protein SrrA.
 
 0.943
Your Current Organism:
Omnitrophica bacterium OLB16
NCBI taxonomy Id: 1617433
Other names: O. bacterium OLB16, candidate division OP3 bacterium OLB16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.