STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttgBToluene efflux pump membrane transporter TtgB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1121 aa)    
Predicted Functional Partners:
yibH
Inner membrane protein YibH.
 
  
  0.879
secD
Protein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
 
 0.776
tolC
Outer membrane protein TolC precursor.
 
  0.660
cusB
Cation efflux system protein CusB precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.615
mdtA_1
Multidrug resistance protein MdtA precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  0.612
czcB_2
Cobalt-zinc-cadmium resistance protein CzcB.
  
  0.600
mexA_1
Multidrug resistance protein MexA precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.596
czcB_1
Cobalt-zinc-cadmium resistance protein CzcB.
  
  0.593
KXK39460.1
Preprotein translocase subunit YajC.
  
 
 
 0.578
KXK32279.1
Hypothetical protein.
       0.547
Your Current Organism:
Omnitrophica bacterium OLB16
NCBI taxonomy Id: 1617433
Other names: O. bacterium OLB16, candidate division OP3 bacterium OLB16
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.