STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycf3_9Photosystem I assembly protein Ycf3. (817 aa)    
Predicted Functional Partners:
ycf3_2
Photosystem I assembly protein Ycf3.
 
 0.790
pfp
Pyrophosphate--fructose 6-phosphate 1-phosphotransferase.
       0.737
cyaA
Adenylate cyclase 1.
 
  
  0.721
nlpI
Lipoprotein NlpI precursor.
 
 0.719
ycf3_8
Photosystem I assembly protein Ycf3.
 
 0.692
phoR
Alkaline phosphatase synthesis sensor protein PhoR.
  
 
 0.642
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.642
ycf3_1
Photosystem I assembly protein Ycf3.
 
 0.617
KXK37244.1
Blue-light-activated protein.
 
 
 0.605
prkC
Serine/threonine-protein kinase PrkC.
 
  
  0.595
Your Current Organism:
Omnitrophica bacterium OLB16
NCBI taxonomy Id: 1617433
Other names: O. bacterium OLB16, candidate division OP3 bacterium OLB16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.