ENSAPEP00000000085 protein (Amphiprion percula)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSAPEP00000000085

Polymerase (DNA directed), epsilon 3 (p17 subunit). (136 aa)

Predicted Functional Partners:

ENSAPEP00000023695

0.999

ENSAPEP00000032158

0.999

ENSAPEP00000032520

0.999

ENSAPEP00000016697

0.995

ENSAPEP00000032514

0.992

ENSAPEP00000019279

0.991

ENSAPEP00000032532

0.990

ENSAPEP00000031933

0.986

ENSAPEP00000022437

0.985

ENSAPEP00000005437

0.983

Your Current Organism:

Amphiprion percula

NCBI taxonomy Id: 161767
Other names: A. percula, Picasso clownfish, orange clownfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSAPEP00000000085	ENSAPEP00000005437	Polymerase (DNA directed), epsilon 3 (p17 subunit).	REV3 like, DNA directed polymerase zeta catalytic subunit.	0.983
ENSAPEP00000000085	ENSAPEP00000016697	Polymerase (DNA directed), epsilon 3 (p17 subunit).	Chromatin accessibility complex subunit 1.	0.995
ENSAPEP00000000085	ENSAPEP00000019279	Polymerase (DNA directed), epsilon 3 (p17 subunit).	Nuclear transcription factor Y, gamma.	0.991
ENSAPEP00000000085	ENSAPEP00000022437	Polymerase (DNA directed), epsilon 3 (p17 subunit).	DNA polymerase.	0.985
ENSAPEP00000000085	ENSAPEP00000023695	Polymerase (DNA directed), epsilon 3 (p17 subunit).	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	0.999
ENSAPEP00000000085	ENSAPEP00000031933	Polymerase (DNA directed), epsilon 3 (p17 subunit).	Im:7138239.	0.986
ENSAPEP00000000085	ENSAPEP00000032158	Polymerase (DNA directed), epsilon 3 (p17 subunit).	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.999
ENSAPEP00000000085	ENSAPEP00000032514	Polymerase (DNA directed), epsilon 3 (p17 subunit).	DNA polymerase.	0.992
ENSAPEP00000000085	ENSAPEP00000032520	Polymerase (DNA directed), epsilon 3 (p17 subunit).	Polymerase (DNA-directed), epsilon 4, accessory subunit.	0.999
ENSAPEP00000000085	ENSAPEP00000032532	Polymerase (DNA directed), epsilon 3 (p17 subunit).	SCY domain-containing protein.	0.990
ENSAPEP00000005437	ENSAPEP00000000085	REV3 like, DNA directed polymerase zeta catalytic subunit.	Polymerase (DNA directed), epsilon 3 (p17 subunit).	0.983
ENSAPEP00000005437	ENSAPEP00000016697	REV3 like, DNA directed polymerase zeta catalytic subunit.	Chromatin accessibility complex subunit 1.	0.611
ENSAPEP00000005437	ENSAPEP00000019279	REV3 like, DNA directed polymerase zeta catalytic subunit.	Nuclear transcription factor Y, gamma.	0.611
ENSAPEP00000005437	ENSAPEP00000022437	REV3 like, DNA directed polymerase zeta catalytic subunit.	DNA polymerase.	0.929
ENSAPEP00000005437	ENSAPEP00000023695	REV3 like, DNA directed polymerase zeta catalytic subunit.	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	0.991
ENSAPEP00000005437	ENSAPEP00000031933	REV3 like, DNA directed polymerase zeta catalytic subunit.	Im:7138239.	0.611
ENSAPEP00000005437	ENSAPEP00000032158	REV3 like, DNA directed polymerase zeta catalytic subunit.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.920
ENSAPEP00000005437	ENSAPEP00000032514	REV3 like, DNA directed polymerase zeta catalytic subunit.	DNA polymerase.	0.727
ENSAPEP00000005437	ENSAPEP00000032520	REV3 like, DNA directed polymerase zeta catalytic subunit.	Polymerase (DNA-directed), epsilon 4, accessory subunit.	0.922
ENSAPEP00000005437	ENSAPEP00000032532	REV3 like, DNA directed polymerase zeta catalytic subunit.	SCY domain-containing protein.	0.922