STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSAPEP00000001004Spalt-like transcription factor 4. (1081 aa)    
Predicted Functional Partners:
ENSAPEP00000009378
POU domain protein.
   
 0.974
RBBP4
RB binding protein 4, chromatin remodeling factor.
   
  0.889
ENSAPEP00000004696
WD_REPEATS_REGION domain-containing protein.
   
  0.889
ENSAPEP00000029992
WD_REPEATS_REGION domain-containing protein.
   
  0.889
ENSAPEP00000023366
Cereblon.
    
 
 0.850
ENSAPEP00000004561
WD repeat domain 73.
    
 0.740
ENSAPEP00000019805
Brain-specific homeobox.
   
 0.728
HDAC2
Histone deacetylase 2; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.
   
 0.726
ENSAPEP00000009985
Methyl-CpG binding domain protein 3a.
   
  0.720
ENSAPEP00000030154
MBD domain-containing protein.
   
  0.720
Your Current Organism:
Amphiprion percula
NCBI taxonomy Id: 161767
Other names: A. percula, Picasso clownfish, orange clownfish
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