ENSAPEP00000001697 protein (Amphiprion percula)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSAPEP00000001697

Ladybird homeobox 1a. (286 aa)

Predicted Functional Partners:

ENSAPEP00000009242

0.517

ENSAPEP00000009383

0.517

ENSAPEP00000010189

0.517

ENSAPEP00000014246

0.517

ENSAPEP00000032710

0.517

ENSAPEP00000033132

0.517

ENSAPEP00000021413

0.473

ENSAPEP00000004594

0.400

ENSAPEP00000013910

0.400

ENSAPEP00000019745

0.400

Your Current Organism:

Amphiprion percula

NCBI taxonomy Id: 161767
Other names: A. percula, Picasso clownfish, orange clownfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSAPEP00000001697	ENSAPEP00000004594	Ladybird homeobox 1a.	Nuclear receptor subfamily 5, group A, member 2.	0.400
ENSAPEP00000001697	ENSAPEP00000009242	Ladybird homeobox 1a.	Homeobox domain-containing protein.	0.517
ENSAPEP00000001697	ENSAPEP00000009383	Ladybird homeobox 1a.	Pre-B-cell leukemia homeobox 1a.	0.517
ENSAPEP00000001697	ENSAPEP00000010189	Ladybird homeobox 1a.	Pre-B-cell leukemia transcription factor 4.	0.517
ENSAPEP00000001697	ENSAPEP00000013910	Ladybird homeobox 1a.	Nuclear receptor subfamily 5, group A, member 5.	0.400
ENSAPEP00000001697	ENSAPEP00000014246	Ladybird homeobox 1a.	Homeobox domain-containing protein.	0.517
ENSAPEP00000001697	ENSAPEP00000019745	Ladybird homeobox 1a.	Uncharacterized protein.	0.400
ENSAPEP00000001697	ENSAPEP00000021413	Ladybird homeobox 1a.	Iroquois homeobox 4a.	0.473
ENSAPEP00000001697	ENSAPEP00000032710	Ladybird homeobox 1a.	Pre-B-cell leukemia homeobox 2.	0.517
ENSAPEP00000001697	ENSAPEP00000033132	Ladybird homeobox 1a.	Homeobox domain-containing protein.	0.517
ENSAPEP00000004594	ENSAPEP00000001697	Nuclear receptor subfamily 5, group A, member 2.	Ladybird homeobox 1a.	0.400
ENSAPEP00000009242	ENSAPEP00000001697	Homeobox domain-containing protein.	Ladybird homeobox 1a.	0.517
ENSAPEP00000009242	ENSAPEP00000021413	Homeobox domain-containing protein.	Iroquois homeobox 4a.	0.587
ENSAPEP00000009383	ENSAPEP00000001697	Pre-B-cell leukemia homeobox 1a.	Ladybird homeobox 1a.	0.517
ENSAPEP00000009383	ENSAPEP00000021413	Pre-B-cell leukemia homeobox 1a.	Iroquois homeobox 4a.	0.587
ENSAPEP00000010189	ENSAPEP00000001697	Pre-B-cell leukemia transcription factor 4.	Ladybird homeobox 1a.	0.517
ENSAPEP00000010189	ENSAPEP00000021413	Pre-B-cell leukemia transcription factor 4.	Iroquois homeobox 4a.	0.587
ENSAPEP00000013910	ENSAPEP00000001697	Nuclear receptor subfamily 5, group A, member 5.	Ladybird homeobox 1a.	0.400
ENSAPEP00000014246	ENSAPEP00000001697	Homeobox domain-containing protein.	Ladybird homeobox 1a.	0.517
ENSAPEP00000014246	ENSAPEP00000021413	Homeobox domain-containing protein.	Iroquois homeobox 4a.	0.587