ENSAPEP00000006567 protein (Amphiprion percula)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSAPEP00000006567

Histone H2B; Belongs to the histone H2B family. (128 aa)

Predicted Functional Partners:

ENSAPEP00000034873

0.910

ENSAPEP00000004441

0.869

ENSAPEP00000012251

0.869

ENSAPEP00000027288

0.869

ENSAPEP00000029171

0.869

ENSAPEP00000014565

0.853

ENSAPEP00000004545

0.847

ENSAPEP00000031501

0.847

ENSAPEP00000015725

0.841

ENSAPEP00000014448

0.832

Your Current Organism:

Amphiprion percula

NCBI taxonomy Id: 161767
Other names: A. percula, Picasso clownfish, orange clownfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSAPEP00000004441	ENSAPEP00000004545	Lysine (K)-specific demethylase 6A, like.	Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.	0.913
ENSAPEP00000004441	ENSAPEP00000006567	Lysine (K)-specific demethylase 6A, like.	Histone H2B; Belongs to the histone H2B family.	0.869
ENSAPEP00000004441	ENSAPEP00000012251	Lysine (K)-specific demethylase 6A, like.	Lysine (K)-specific demethylase 6B, b.	0.773
ENSAPEP00000004441	ENSAPEP00000014448	Lysine (K)-specific demethylase 6A, like.	Ribosomal protein S27a.	0.809
ENSAPEP00000004441	ENSAPEP00000015725	Lysine (K)-specific demethylase 6A, like.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.	0.512
ENSAPEP00000004441	ENSAPEP00000027288	Lysine (K)-specific demethylase 6A, like.	Lysine (K)-specific demethylase 6B, a.	0.767
ENSAPEP00000004441	ENSAPEP00000029171	Lysine (K)-specific demethylase 6A, like.	Lysine (K)-specific demethylase 6A.	0.837
ENSAPEP00000004441	ENSAPEP00000031501	Lysine (K)-specific demethylase 6A, like.	H2A histone family, member Y; Belongs to the histone H2A family.	0.913
ENSAPEP00000004441	ENSAPEP00000034873	Lysine (K)-specific demethylase 6A, like.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.953
ENSAPEP00000004545	ENSAPEP00000004441	Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.	Lysine (K)-specific demethylase 6A, like.	0.913
ENSAPEP00000004545	ENSAPEP00000006567	Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.	Histone H2B; Belongs to the histone H2B family.	0.847
ENSAPEP00000004545	ENSAPEP00000012251	Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.	Lysine (K)-specific demethylase 6B, b.	0.913
ENSAPEP00000004545	ENSAPEP00000014448	Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.	Ribosomal protein S27a.	0.842
ENSAPEP00000004545	ENSAPEP00000014565	Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.	CTR9 homolog, Paf1/RNA polymerase II complex component.	0.709
ENSAPEP00000004545	ENSAPEP00000015725	Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.	0.831
ENSAPEP00000004545	ENSAPEP00000027288	Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.	Lysine (K)-specific demethylase 6B, a.	0.913
ENSAPEP00000004545	ENSAPEP00000029171	Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.	Lysine (K)-specific demethylase 6A.	0.918
ENSAPEP00000004545	ENSAPEP00000034873	Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.765
ENSAPEP00000006567	ENSAPEP00000004441	Histone H2B; Belongs to the histone H2B family.	Lysine (K)-specific demethylase 6A, like.	0.869
ENSAPEP00000006567	ENSAPEP00000004545	Histone H2B; Belongs to the histone H2B family.	Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.	0.847