STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSAPEP00000007724UPF3B regulator of nonsense mediated mRNA decay. (457 aa)    
Predicted Functional Partners:
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
   
 0.996
UPF1
UPF1 RNA helicase and ATPase.
    
 0.988
ENSAPEP00000023048
Uncharacterized protein.
    
 0.988
ENSAPEP00000032945
Mago homolog, exon junction complex subunit.
    
 0.987
ENSAPEP00000026294
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
   
 0.984
ENSAPEP00000032364
SMG5 nonsense mediated mRNA decay factor.
   
 0.984
ENSAPEP00000032171
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
    
 0.983
ENSAPEP00000009442
Casc3 exon junction complex subunit.
    
 0.981
ENSAPEP00000026669
Serine/arginine repetitive matrix 1.
    
 0.980
RANBP2
RAN binding protein 2.
   
 
  0.979
Your Current Organism:
Amphiprion percula
NCBI taxonomy Id: 161767
Other names: A. percula, Picasso clownfish, orange clownfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.