STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN29970.1ABC transporter, permease. (263 aa)    
Predicted Functional Partners:
KRN29971.1
ABC transporter, ATP-binding protein.
 
  
 0.959
KRN29973.1
ABC superfamily ATP binding cassette transporter, permease.
 
   
 0.913
KRN29972.1
GntR family transcriptional regulator.
 
   
 0.895
KRN29974.1
ABC transporter, ATP-binding protein.
 
   
 0.848
KRN29969.1
Hypothetical protein.
 
     0.824
KRN27176.1
Hypothetical protein.
  
     0.728
KRN31531.1
Crp Fnr family transcriptional regulator.
  
     0.676
KRN31605.1
Hypothetical protein.
  
     0.645
KRN26729.1
Hypothetical protein.
  
     0.634
KRN28031.1
Glycopeptide antibiotics resistance protein.
  
     0.606
Your Current Organism:
Lactobacillus mali
NCBI taxonomy Id: 1618
Other names: ATCC 27053, ATCC 27304 [[Lactobacillus yamanashiensis subsp. yamanashiensis]], CCUG 30141, CCUG 32228, CIP 103142, DSM 20444, KCTC 3596, L. mali, LMG 6899, LMG:6899, Lactobacillus yamanashiensis, Lactobacillus yamanashiensis subsp. mali, Lactobacillus yamanashiensis subsp. yamanashiensis, NBRC 102159, NCIB 10560, NCIB:10560, NCIMB 10560, NRRL B-4563
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.