STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN28033.1Multidrug ABC transporter permease. (224 aa)    
Predicted Functional Partners:
KRN28034.1
Multidrug ABC transporter ATPase.
 
 0.949
KRN28032.1
Transcriptional regulator.
 
     0.889
KRN33202.1
Nitroreductase; Belongs to the flavin oxidoreductase frp family.
  
  
 0.676
KRN33078.1
Hypothetical protein.
  
     0.657
KRN26734.1
ABC transporter ecsA-like protein.
 
 0.598
KRN33084.1
Hypothetical protein.
  
     0.582
KRN31605.1
Hypothetical protein.
  
     0.576
KRN33082.1
Ferric reductase.
  
     0.556
KRN30216.1
Hypothetical protein.
  
    0.550
KRN33083.1
Thiamine biosynthesis membrane-associated lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
  
     0.537
Your Current Organism:
Lactobacillus mali
NCBI taxonomy Id: 1618
Other names: ATCC 27053, ATCC 27304 [[Lactobacillus yamanashiensis subsp. yamanashiensis]], CCUG 30141, CCUG 32228, CIP 103142, DSM 20444, KCTC 3596, L. mali, LMG 6899, LMG:6899, Lactobacillus yamanashiensis, Lactobacillus yamanashiensis subsp. mali, Lactobacillus yamanashiensis subsp. yamanashiensis, NBRC 102159, NCIB 10560, NCIB:10560, NCIMB 10560, NRRL B-4563
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