Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KRN27319.1 | KRN27320.1 | IV36_GL001046 | IV36_GL001047 | Polysaccharide transporter. | Heat shock protein. | 0.930 |
KRN27319.1 | KRN27321.1 | IV36_GL001046 | IV36_GL001048 | Polysaccharide transporter. | Cell division protein DIVIC. | 0.733 |
KRN27319.1 | KRN27322.1 | IV36_GL001046 | IV36_GL001049 | Polysaccharide transporter. | RNA-binding protein. | 0.632 |
KRN27319.1 | KRN28273.1 | IV36_GL001046 | IV36_GL000525 | Polysaccharide transporter. | Hypothetical protein. | 0.495 |
KRN27319.1 | KRN33162.1 | IV36_GL001046 | IV36_GL000897 | Polysaccharide transporter. | Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape. | 0.531 |
KRN27319.1 | KRN34300.1 | IV36_GL001046 | IV36_GL000097 | Polysaccharide transporter. | Signal recognition particle associated protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | 0.500 |
KRN27319.1 | ldh | IV36_GL001046 | IV36_GL001043 | Polysaccharide transporter. | L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family. | 0.518 |
KRN27319.1 | mfd | IV36_GL001046 | IV36_GL001045 | Polysaccharide transporter. | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.872 |
KRN27319.1 | minC | IV36_GL001046 | IV36_GL000899 | Polysaccharide transporter. | Cell division inhibitor; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family. | 0.491 |
KRN27319.1 | pth | IV36_GL001046 | IV36_GL001044 | Polysaccharide transporter. | peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.809 |
KRN27320.1 | KRN27319.1 | IV36_GL001047 | IV36_GL001046 | Heat shock protein. | Polysaccharide transporter. | 0.930 |
KRN27320.1 | KRN27321.1 | IV36_GL001047 | IV36_GL001048 | Heat shock protein. | Cell division protein DIVIC. | 0.740 |
KRN27320.1 | KRN27322.1 | IV36_GL001047 | IV36_GL001049 | Heat shock protein. | RNA-binding protein. | 0.637 |
KRN27320.1 | ldh | IV36_GL001047 | IV36_GL001043 | Heat shock protein. | L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family. | 0.520 |
KRN27320.1 | mfd | IV36_GL001047 | IV36_GL001045 | Heat shock protein. | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.862 |
KRN27320.1 | pth | IV36_GL001047 | IV36_GL001044 | Heat shock protein. | peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.814 |
KRN27321.1 | KRN27319.1 | IV36_GL001048 | IV36_GL001046 | Cell division protein DIVIC. | Polysaccharide transporter. | 0.733 |
KRN27321.1 | KRN27320.1 | IV36_GL001048 | IV36_GL001047 | Cell division protein DIVIC. | Heat shock protein. | 0.740 |
KRN27321.1 | KRN27322.1 | IV36_GL001048 | IV36_GL001049 | Cell division protein DIVIC. | RNA-binding protein. | 0.775 |
KRN27321.1 | ldh | IV36_GL001048 | IV36_GL001043 | Cell division protein DIVIC. | L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family. | 0.441 |
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