KRN31605.1 protein (Lactobacillus mali) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRN31605.1

Hypothetical protein. (313 aa)

Predicted Functional Partners:

KRN31604.1

0.952

KRN31603.1

0.883

KRN27158.1

0.841

KRN31606.1

0.816

KRN33099.1

0.807

KRN27175.1

0.660

KRN29970.1

0.645

KRN28032.1

0.644

KRN29107.1

0.590

KRN33141.1

0.578

Your Current Organism:

Lactobacillus mali

NCBI taxonomy Id: 1618
Other names: ATCC 27053, ATCC 27304 [[Lactobacillus yamanashiensis subsp. yamanashiensis]], CCUG 30141, CCUG 32228, CIP 103142, DSM 20444, KCTC 3596, L. mali, LMG 6899, LMG:6899, Lactobacillus yamanashiensis, Lactobacillus yamanashiensis subsp. mali, Lactobacillus yamanashiensis subsp. yamanashiensis, NBRC 102159, NCIB 10560, NCIB:10560, NCIMB 10560, NRRL B-4563

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRN27158.1	KRN27175.1	IV36_GL001153	IV36_GL001087	ComX; Belongs to the sigma-70 factor family.	Hypothetical protein.	0.641
KRN27158.1	KRN31605.1	IV36_GL001153	IV36_GL001727	ComX; Belongs to the sigma-70 factor family.	Hypothetical protein.	0.841
KRN27158.1	KRN33099.1	IV36_GL001153	IV36_GL000832	ComX; Belongs to the sigma-70 factor family.	Hypothetical protein; Belongs to the sigma-70 factor family.	0.746
KRN27175.1	KRN27158.1	IV36_GL001087	IV36_GL001153	Hypothetical protein.	ComX; Belongs to the sigma-70 factor family.	0.641
KRN27175.1	KRN29970.1	IV36_GL001087	IV36_GL000239	Hypothetical protein.	ABC transporter, permease.	0.460
KRN27175.1	KRN31605.1	IV36_GL001087	IV36_GL001727	Hypothetical protein.	Hypothetical protein.	0.660
KRN27175.1	KRN33099.1	IV36_GL001087	IV36_GL000832	Hypothetical protein.	Hypothetical protein; Belongs to the sigma-70 factor family.	0.668
KRN28032.1	KRN29107.1	IV36_GL000567	IV36_GL000424	Transcriptional regulator.	Hypothetical protein.	0.563
KRN28032.1	KRN31605.1	IV36_GL000567	IV36_GL001727	Transcriptional regulator.	Hypothetical protein.	0.644
KRN29107.1	KRN28032.1	IV36_GL000424	IV36_GL000567	Hypothetical protein.	Transcriptional regulator.	0.563
KRN29107.1	KRN31605.1	IV36_GL000424	IV36_GL001727	Hypothetical protein.	Hypothetical protein.	0.590
KRN29970.1	KRN27175.1	IV36_GL000239	IV36_GL001087	ABC transporter, permease.	Hypothetical protein.	0.460
KRN29970.1	KRN31605.1	IV36_GL000239	IV36_GL001727	ABC transporter, permease.	Hypothetical protein.	0.645
KRN29970.1	KRN33099.1	IV36_GL000239	IV36_GL000832	ABC transporter, permease.	Hypothetical protein; Belongs to the sigma-70 factor family.	0.405
KRN29970.1	KRN33141.1	IV36_GL000239	IV36_GL000875	ABC transporter, permease.	Hypothetical protein.	0.537
KRN31603.1	KRN31604.1	IV36_GL001725	IV36_GL001726	PadR family transcriptional regulator.	Hypothetical protein.	0.980
KRN31603.1	KRN31605.1	IV36_GL001725	IV36_GL001727	PadR family transcriptional regulator.	Hypothetical protein.	0.883
KRN31603.1	KRN31606.1	IV36_GL001725	IV36_GL001728	PadR family transcriptional regulator.	Stress-responsive transcriptional regulator PspC.	0.768
KRN31604.1	KRN31603.1	IV36_GL001726	IV36_GL001725	Hypothetical protein.	PadR family transcriptional regulator.	0.980
KRN31604.1	KRN31605.1	IV36_GL001726	IV36_GL001727	Hypothetical protein.	Hypothetical protein.	0.952

page 1 of 2

Network Stats

number of nodes:

2

number of edges:

1

average node degree:

1

avg. local clustering coefficient:

1

expected number of edges:

1

PPI enrichment p-value:

0.5

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006091

Generation of precursor metabolites and energy

5 of 92

1.14

0.69

0.0184

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0050136

NADH dehydrogenase (quinone) activity

3 of 15

1.71

0.85

0.0202

GO:0010181

FMN binding

3 of 15

1.71

0.85

0.0202

GO:0050661

NADP binding

2 of 9

1.75

0.71

0.0430

GO:0016491

Oxidoreductase activity

5 of 145

0.94

0.58

0.0202

GO:0036094

Small molecule binding

7 of 467

0.58

0.35

0.0430

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:2973

Cyclase activity, and Nicotinate-nucleotide adenylyltransferase activity

3 of 5

2.18

1.47

0.0016

CL:3372

Mixed, incl. SLBB domain, and ACP-like superfamily

2 of 5

2.01

0.71

0.0467

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00010

Glycolysis / Gluconeogenesis

3 of 33

1.36

0.8

0.0154

map01200

Carbon metabolism

4 of 86

1.07

0.67

0.0154

map01110

Biosynthesis of secondary metabolites

6 of 328

0.67

0.43

0.0209

map01100

Metabolic pathways

11 of 891

0.5

0.42

0.00040

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF00037

4Fe-4S binding domain

3 of 17

1.65

0.83

0.0212

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About