STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN31643.1Lysin. (419 aa)    
Predicted Functional Partners:
KRN31642.1
Hypothetical protein.
       0.783
KRN31641.1
Hypothetical protein.
       0.705
KRN26645.1
Hypothetical protein.
  
     0.601
KRN31640.1
Hypothetical protein.
       0.557
KRN31637.1
Hypothetical protein.
       0.542
KRN31639.1
Hypothetical protein.
       0.542
KRN31638.1
Hypothetical protein.
       0.540
KRN27175.1
Hypothetical protein.
 
  
 0.489
KRN33081.1
XRE family transcriptional regulator.
  
     0.485
KRN32143.1
Hypothetical protein.
  
     0.482
Your Current Organism:
Lactobacillus mali
NCBI taxonomy Id: 1618
Other names: ATCC 27053, ATCC 27304 [[Lactobacillus yamanashiensis subsp. yamanashiensis]], CCUG 30141, CCUG 32228, CIP 103142, DSM 20444, KCTC 3596, L. mali, LMG 6899, LMG:6899, Lactobacillus yamanashiensis, Lactobacillus yamanashiensis subsp. mali, Lactobacillus yamanashiensis subsp. yamanashiensis, NBRC 102159, NCIB 10560, NCIB:10560, NCIMB 10560, NRRL B-4563
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.