KMK66236.1 protein (Puniceibacterium sp. IMCC21224)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KMK66236.1

PFAM: MacB-like periplasmic core domain; FtsX-like permease family; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family. (428 aa)

Predicted Functional Partners:

lolD

0.999

KMK66727.1

0.994

KMK66227.1

0.993

KMK65572.1

0.933

bamA

0.788

tolQ

0.717

tolB

0.710

KMK68431.1

0.700

pal

0.684

KMK67245.1

0.668

Your Current Organism:

Puniceibacterium sp. IMCC21224

NCBI taxonomy Id: 1618204
Other names: P. sp. IMCC21224

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KMK65572.1	KMK66227.1	IMCC21224_11404	IMCC21224_111075	Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter.	0.933
KMK65572.1	KMK66236.1	IMCC21224_11404	IMCC21224_111084	Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	PFAM: MacB-like periplasmic core domain; FtsX-like permease family; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family.	0.933
KMK65572.1	KMK66727.1	IMCC21224_11404	IMCC21224_111584	Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter.	0.933
KMK65572.1	KMK68431.1	IMCC21224_11404	IMCC21224_113313	Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	Hypothetical protein.	0.954
KMK65572.1	bamA	IMCC21224_11404	IMCC21224_112536	Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	Beta-barrel assembly machine subunit BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.663
KMK65572.1	lolD	IMCC21224_11404	IMCC21224_111085	Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	ABC-type antimicrobial peptide transport system, ATPase component; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.	0.933
KMK65572.1	pal	IMCC21224_11404	IMCC21224_113010	Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.	0.507
KMK66227.1	KMK65572.1	IMCC21224_111075	IMCC21224_11404	ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter.	Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	0.933
KMK66227.1	KMK66236.1	IMCC21224_111075	IMCC21224_111084	ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter.	PFAM: MacB-like periplasmic core domain; FtsX-like permease family; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family.	0.993
KMK66236.1	KMK65572.1	IMCC21224_111084	IMCC21224_11404	PFAM: MacB-like periplasmic core domain; FtsX-like permease family; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family.	Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	0.933
KMK66236.1	KMK66227.1	IMCC21224_111084	IMCC21224_111075	PFAM: MacB-like periplasmic core domain; FtsX-like permease family; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family.	ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter.	0.993
KMK66236.1	KMK66727.1	IMCC21224_111084	IMCC21224_111584	PFAM: MacB-like periplasmic core domain; FtsX-like permease family; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family.	ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter.	0.994
KMK66236.1	KMK67245.1	IMCC21224_111084	IMCC21224_112112	PFAM: MacB-like periplasmic core domain; FtsX-like permease family; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family.	PFAM: SurA N-terminal domain; PPIC-type PPIASE domain.	0.668
KMK66236.1	KMK68431.1	IMCC21224_111084	IMCC21224_113313	PFAM: MacB-like periplasmic core domain; FtsX-like permease family; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family.	Hypothetical protein.	0.700
KMK66236.1	bamA	IMCC21224_111084	IMCC21224_112536	PFAM: MacB-like periplasmic core domain; FtsX-like permease family; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family.	Beta-barrel assembly machine subunit BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.788
KMK66236.1	lolD	IMCC21224_111084	IMCC21224_111085	PFAM: MacB-like periplasmic core domain; FtsX-like permease family; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family.	ABC-type antimicrobial peptide transport system, ATPase component; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.	0.999
KMK66236.1	pal	IMCC21224_111084	IMCC21224_113010	PFAM: MacB-like periplasmic core domain; FtsX-like permease family; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family.	Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.	0.684
KMK66236.1	tolB	IMCC21224_111084	IMCC21224_113011	PFAM: MacB-like periplasmic core domain; FtsX-like permease family; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family.	Tol-pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.	0.710
KMK66236.1	tolQ	IMCC21224_111084	IMCC21224_113014	PFAM: MacB-like periplasmic core domain; FtsX-like permease family; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family.	Cell division and transport-associated protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.	0.717
KMK66727.1	KMK65572.1	IMCC21224_111584	IMCC21224_11404	ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter.	Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	0.933