STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KMK68739.1PFAM: Domain of unknown function (DUF3576). (165 aa)    
Predicted Functional Partners:
KMK68789.1
Beta-barrel assembly machine subunit BamF; PFAM: Protein of unknown function (DUF3035).
  
     0.769
leuS
PFAM: Leucyl-tRNA synthetase, Domain 2; tRNA synthetases class I (I, L, M and V); Anticodon-binding domain of tRNA; TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.743
KMK67382.1
Beta-barrel assembly machine subunit BamE; PFAM: SmpA / OmlA family.
  
     0.725
KMK68409.1
PFAM: COQ9; TIGRFAM: rpsU-divergently transcribed protein.
  
     0.671
KMK68740.1
PFAM: Gram-negative porin.
 
   
 0.670
KMK66785.1
WD40-like repeat protein; PFAM: PQQ-like domain.
  
    0.657
KMK66061.1
Peptidoglycan glycosyltransferase; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; TIGRFAM: penicillin-binding protein 2.
  
     0.654
hisH
Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.
   
    0.576
KMK68734.1
TIGRFAM: DNA polymerase III, delta subunit.
 
     0.561
KMK65870.1
ATPase involved in chromosome partitioning; PFAM: ATPase MipZ.
  
     0.561
Your Current Organism:
Puniceibacterium sp. IMCC21224
NCBI taxonomy Id: 1618204
Other names: P. sp. IMCC21224
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.