STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KMK64013.1PFAM: Bacterial type II/III secretion system short domain; Bacterial type II and III secretion system protein; TIGRFAM: type II secretion system protein D. (652 aa)    
Predicted Functional Partners:
KMK64011.1
Hypothetical protein.
  
 
 0.990
KMK64015.1
Type II secretory pathway, component PulF; PFAM: Type II secretion system (T2SS), protein F.
 
  
 0.974
KMK64014.1
PFAM: Type II/IV secretion system protein.
  
 0.970
KMK64003.1
PFAM: Type IV pilin N-term methylation site GFxxxE; Type II secretion system (T2SS), protein G; TIGRFAM: type II secretion system protein G; prepilin-type N-terminal cleavage/methylation domain.
  
 0.901
KMK64007.1
Type II secretory pathway, component PulK; PFAM: Type II secretion system (T2SS), protein K.
 
   
 0.863
KMK64002.1
Prepilin signal peptidase PulO-like peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.851
KMK68848.1
PFAM: Surface presentation of antigens (SPOA); TIGRFAM: flagellar motor switch protein FliN.
  
  
 0.778
KMK66010.1
Hypothetical protein; PFAM: CHAT domain.
  
 
  0.748
KMK63993.1
Hypothetical protein.
  
     0.696
KMK63990.1
Putative permease; PFAM: Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; ASPIC and UnbV; Predicted permease.
 
     0.667
Your Current Organism:
Puniceibacterium sp. IMCC21224
NCBI taxonomy Id: 1618204
Other names: P. sp. IMCC21224
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.