STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJT43185.1Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (577 aa)    
Predicted Functional Partners:
AJT42808.1
Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.941
AJT42328.1
Ribokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.937
AJT42817.1
Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.933
AJT43214.1
Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.932
AJT42015.1
Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 1 family.
 
 
 0.929
glgB
Glycogen branching protein; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
 
 0.928
AJT41657.1
6-phospho-beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.909
AJT42603.1
Glycogen debranching protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family.
  
 0.740
AJT41664.1
Glycogen debranching protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family.
 
  
 0.725
AJT41593.1
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.720
Your Current Organism:
Psychromicrobium lacuslunae
NCBI taxonomy Id: 1618207
Other names: Arthrobacter sp. IHBB 11108, JCM 31143, KACC 19070, MCC 2780, MTCC 12460, P. lacuslunae, strain IHBB 11108
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