STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJT42509.1Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)    
Predicted Functional Partners:
AJT42507.1
Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.943
AJT42508.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.924
AJT42506.1
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.822
AJT42510.1
Glucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.783
AJT43188.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.667
AJT42569.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.567
AJT42948.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.563
xylB
Xylulose kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.544
AJT42033.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.532
AJT42677.1
5-deoxyglucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.524
Your Current Organism:
Psychromicrobium lacuslunae
NCBI taxonomy Id: 1618207
Other names: Arthrobacter sp. IHBB 11108, JCM 31143, KACC 19070, MCC 2780, MTCC 12460, P. lacuslunae, strain IHBB 11108
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.