STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJT42569.1Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (367 aa)    
Predicted Functional Partners:
AJT43198.1
Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.967
AJT41312.1
Glutamine amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.754
AJT42677.1
5-deoxyglucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.616
AJT42508.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.601
AJT42507.1
Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.577
AJT42509.1
Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.567
AJT41048.1
AP endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.558
AJT42004.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.531
AJT41412.1
DegT/DnrJ/EryC1/StrS aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.514
AJT42242.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.514
Your Current Organism:
Psychromicrobium lacuslunae
NCBI taxonomy Id: 1618207
Other names: Arthrobacter sp. IHBB 11108, JCM 31143, KACC 19070, MCC 2780, MTCC 12460, P. lacuslunae, strain IHBB 11108
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