STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KKQ90931.12-oxoglutarate ferredoxin oxidoreductase, gamma subunit. (275 aa)    
Predicted Functional Partners:
KKQ90929.1
2-oxoglutarate synthase KorA.
 
 0.999
KKQ90930.1
2-oxoacid:ferredoxin oxidoreductase, beta subunit.
 
 0.999
KKQ90928.1
Acetyl coenzyme A synthetase (ADP forming), alpha domain protein.
    
 0.984
KKQ90826.1
Acetyl coenzyme A synthetase (ADP forming), alpha domain protein.
    
 0.934
KKQ90525.1
GCN5-related N-acetyltransferase.
    
  0.923
KKQ90831.1
Bifunctional phosphoglucose/phosphomannose isomerase.
  
 
 0.876
KKQ90755.1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.814
KKQ90850.1
(P)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
   
 
  0.798
topA
Topoisomerase protein; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA su [...]
  
   0.737
KKQ90354.1
TonB family protein.
    
  0.700
Your Current Organism:
Berkelbacteria bacterium GW2011GWA13910
NCBI taxonomy Id: 1618332
Other names: B. bacterium GW2011_GWA1_39_10, Berkelbacteria bacterium GW2011_GWA1_39_10
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