STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KKQ90678.1Rod shape-determining protein MreD. (158 aa)    
Predicted Functional Partners:
KKQ90677.1
Penicillin-binding protein 2.
       0.773
KKQ90679.1
Cell shape-determining protein MreC.
       0.773
KKQ90680.1
Cell shape determining protein, MreB/Mrl family.
       0.762
KKQ90676.1
Hypothetical protein.
       0.661
greA
GreA2; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.533
mltG
Hypothetical protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
       0.411
KKQ90682.1
Hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
       0.411
KKQ90683.1
Hypothetical protein.
       0.411
Your Current Organism:
Berkelbacteria bacterium GW2011GWA13910
NCBI taxonomy Id: 1618332
Other names: B. bacterium GW2011_GWA1_39_10, Berkelbacteria bacterium GW2011_GWA1_39_10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.