Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KKP89169.1 | KKP89172.1 | UR93_C0001G0001 | UR93_C0001G0004 | Peptide chain release factor 2. | Hypothetical protein. | 0.999 |
KKP89169.1 | KKP89224.1 | UR93_C0001G0001 | UR93_C0001G0056 | Peptide chain release factor 2. | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.999 |
KKP89169.1 | KKP89226.1 | UR93_C0001G0001 | UR93_C0001G0058 | Peptide chain release factor 2. | 50S ribosomal protein L17. | 0.999 |
KKP89169.1 | KKP89246.1 | UR93_C0001G0001 | UR93_C0001G0078 | Peptide chain release factor 2. | 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.999 |
KKP89169.1 | rnc | UR93_C0001G0001 | UR93_C0001G0042 | Peptide chain release factor 2. | Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.989 |
KKP89169.1 | rplJ | UR93_C0001G0001 | UR93_C0001G0006 | Peptide chain release factor 2. | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.880 |
KKP89169.1 | rplL | UR93_C0001G0001 | UR93_C0001G0007 | Peptide chain release factor 2. | 50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.999 |
KKP89169.1 | rplM | UR93_C0001G0001 | UR93_C0001G0057 | Peptide chain release factor 2. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
KKP89169.1 | rpmF | UR93_C0001G0001 | UR93_C0001G0040 | Peptide chain release factor 2. | 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.999 |
KKP89169.1 | rpsD | UR93_C0001G0001 | UR93_C0001G0060 | Peptide chain release factor 2. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.986 |
KKP89172.1 | KKP89169.1 | UR93_C0001G0004 | UR93_C0001G0001 | Hypothetical protein. | Peptide chain release factor 2. | 0.999 |
KKP89172.1 | KKP89224.1 | UR93_C0001G0004 | UR93_C0001G0056 | Hypothetical protein. | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.999 |
KKP89172.1 | KKP89226.1 | UR93_C0001G0004 | UR93_C0001G0058 | Hypothetical protein. | 50S ribosomal protein L17. | 0.999 |
KKP89172.1 | KKP89246.1 | UR93_C0001G0004 | UR93_C0001G0078 | Hypothetical protein. | 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.999 |
KKP89172.1 | rnc | UR93_C0001G0004 | UR93_C0001G0042 | Hypothetical protein. | Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.886 |
KKP89172.1 | rplJ | UR93_C0001G0004 | UR93_C0001G0006 | Hypothetical protein. | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.999 |
KKP89172.1 | rplL | UR93_C0001G0004 | UR93_C0001G0007 | Hypothetical protein. | 50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.999 |
KKP89172.1 | rplM | UR93_C0001G0004 | UR93_C0001G0057 | Hypothetical protein. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
KKP89172.1 | rpmF | UR93_C0001G0004 | UR93_C0001G0040 | Hypothetical protein. | 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.999 |
KKP89172.1 | rpsD | UR93_C0001G0004 | UR93_C0001G0060 | Hypothetical protein. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
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