STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
purDPhosphoribosylamine-glycine ligase; Belongs to the GARS family. (431 aa)    
Predicted Functional Partners:
folD
Bifunctional protein FolD; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
  
 
 0.967
KKQ73580.1
Bifunctional protein FolD.
  
 
 0.967
KKQ73558.1
Bifunctional protein FolD.
  
 
 0.967
KKQ74573.1
Glucosamine/fructose-6-phosphate aminotransferase, isomerizing.
    
 0.960
KKQ73734.1
Hypothetical protein.
  
 
 0.956
KKQ73559.1
Hypothetical protein.
  
 
 0.956
KKQ73601.1
Hypothetical protein.
    
  0.933
def
Peptide deformylase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the polypeptide deformylase family.
    
 0.887
KKQ74613.1
30S ribosomal protein S17.
   
    0.771
KKQ74376.1
GCN5-related N-acetyltransferase.
    
  0.685
Your Current Organism:
Berkelbacteria bacterium GW2011GWB1385
NCBI taxonomy Id: 1618336
Other names: B. bacterium GW2011_GWB1_38_5, Berkelbacteria bacterium GW2011_GWB1_38_5
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