STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KKP69836.1PolyA polymerase. (473 aa)    
Predicted Functional Partners:
cysS
Cysteine-tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
  
 0.830
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
 0.806
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
   
 
  0.741
KKP69835.1
Hypothetical protein.
  
    0.724
KKP69833.1
GCN5-related N-acetyltransferase.
       0.693
KKP69828.1
Glutamine amidotransferase class-I.
  
 
  0.691
KKP69829.1
30S ribosomal protein S1.
 
  
 0.582
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
       0.581
KKP70271.1
Metal-dependent phosphohydrolase HD sub domain protein.
    
  0.565
rny
Ribonuclease Y; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
    
  0.565
Your Current Organism:
candidate division CPR3 bacterium GW2011GWF23518
NCBI taxonomy Id: 1618350
Other names: c. division CPR3 bacterium GW2011_GWF2_35_18, candidate division CPR3 bacterium GW2011_GWF2_35_18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.