Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| KKP70307.1 | efp | UR67_C0001G0216 | UR67_C0002G0028 | Hypothetical protein. | Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.681 |
| KKP70307.1 | rplS | UR67_C0001G0216 | UR67_C0001G0120 | Hypothetical protein. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.715 |
| KKP70307.1 | rpmA | UR67_C0001G0216 | UR67_C0001G0170 | Hypothetical protein. | 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.710 |
| KKP70307.1 | rpsC | UR67_C0001G0216 | UR67_C0004G0084 | Hypothetical protein. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
| KKP70307.1 | rpsP | UR67_C0001G0216 | UR67_C0002G0088 | Hypothetical protein. | 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.762 |
| KKP70333.1 | efp | UR67_C0001G0242 | UR67_C0002G0028 | UDP-glucose 4-epimerase. | Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.681 |
| KKP70333.1 | rplS | UR67_C0001G0242 | UR67_C0001G0120 | UDP-glucose 4-epimerase. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.749 |
| KKP70333.1 | rpmA | UR67_C0001G0242 | UR67_C0001G0170 | UDP-glucose 4-epimerase. | 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.710 |
| KKP70333.1 | rpsC | UR67_C0001G0242 | UR67_C0004G0084 | UDP-glucose 4-epimerase. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
| KKP70333.1 | rpsP | UR67_C0001G0242 | UR67_C0002G0088 | UDP-glucose 4-epimerase. | 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.762 |
| def | rplI | UR67_C0001G0191 | UR67_C0001G0257 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 50S ribosomal protein L9; Binds to the 23S rRNA. | 0.999 |
| def | rplS | UR67_C0001G0191 | UR67_C0001G0120 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.999 |
| def | rplU | UR67_C0001G0191 | UR67_C0001G0171 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.999 |
| def | rpmA | UR67_C0001G0191 | UR67_C0001G0170 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.999 |
| def | rpmE | UR67_C0001G0191 | UR67_C0002G0003 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Hypothetical protein; Binds the 23S rRNA. | 0.992 |
| def | rpsC | UR67_C0001G0191 | UR67_C0004G0084 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
| def | rpsP | UR67_C0001G0191 | UR67_C0002G0088 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.999 |
| efp | KKP70307.1 | UR67_C0002G0028 | UR67_C0001G0216 | Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | Hypothetical protein. | 0.681 |
| efp | KKP70333.1 | UR67_C0002G0028 | UR67_C0001G0242 | Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | UDP-glucose 4-epimerase. | 0.681 |
| efp | rplI | UR67_C0002G0028 | UR67_C0001G0257 | Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 50S ribosomal protein L9; Binds to the 23S rRNA. | 0.999 |
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