STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KKQ28310.1Peptide deformylase. (134 aa)    
Predicted Functional Partners:
rplV
50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.
    
   0.997
KKQ29763.1
50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
    
   0.992
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.986
KKQ27346.1
Trigger factor.
  
 
 0.985
rpsF
Hypothetical protein; Binds together with S18 to 16S ribosomal RNA.
   
   0.981
rplD
50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.
   
   0.975
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.974
rpsP
30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
   0.973
rpsB
30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
  
   0.972
KKQ26923.1
50S ribosomal protein L27.
  
   0.972
Your Current Organism:
Levybacteria bacterium GW2011GWA13716
NCBI taxonomy Id: 1618452
Other names: C. Levybacteria bacterium GW2011_GWA1_37_16, Candidatus Levybacteria bacterium GW2011_GWA1_37_16
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