Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KKP61483.1 | KKP61485.1 | UR54_C0001G0023 | UR54_C0001G0025 | Putative rRNA maturation factor. | Hypothetical protein. | 0.497 |
KKP61483.1 | dnaX | UR54_C0001G0023 | UR54_C0001G0022 | Putative rRNA maturation factor. | Polymerase III gamma subunit protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.615 |
KKP61483.1 | rpsU | UR54_C0001G0023 | UR54_C0001G0024 | Putative rRNA maturation factor. | 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.773 |
KKP61485.1 | KKP61483.1 | UR54_C0001G0025 | UR54_C0001G0023 | Hypothetical protein. | Putative rRNA maturation factor. | 0.497 |
KKP61485.1 | rpsU | UR54_C0001G0025 | UR54_C0001G0024 | Hypothetical protein. | 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.472 |
dnaX | KKP61483.1 | UR54_C0001G0022 | UR54_C0001G0023 | Polymerase III gamma subunit protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | Putative rRNA maturation factor. | 0.615 |
dnaX | rpsU | UR54_C0001G0022 | UR54_C0001G0024 | Polymerase III gamma subunit protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.494 |
rpsU | KKP61483.1 | UR54_C0001G0024 | UR54_C0001G0023 | 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | Putative rRNA maturation factor. | 0.773 |
rpsU | KKP61485.1 | UR54_C0001G0024 | UR54_C0001G0025 | 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | Hypothetical protein. | 0.472 |
rpsU | dnaX | UR54_C0001G0024 | UR54_C0001G0022 | 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | Polymerase III gamma subunit protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.494 |