STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KKQ37991.1Single-stranded nucleic acid binding R3H. (166 aa)    
Predicted Functional Partners:
KKQ37992.1
Hypothetical protein.
 
  
 0.921
KKQ37993.1
Membrane protein insertase, YidC/Oxa1 family.
  
  
 0.904
rpmH
50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
     
 0.733
KKQ38309.1
50S ribosomal protein L2.
   
    0.633
KKQ38312.1
50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
   
    0.619
KKQ38310.1
50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g., L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.
   
    0.618
KKQ38322.1
Ribosomal protein S5 containing protein, expressed; Belongs to the universal ribosomal protein uS5 family.
   
    0.618
rpsS
SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
    0.617
rpsQ
Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
    0.616
rplO
50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
   
    0.616
Your Current Organism:
Roizmanbacteria bacterium GW2011GWA2377
NCBI taxonomy Id: 1618481
Other names: C. Roizmanbacteria bacterium GW2011_GWA2_37_7, Candidatus Roizmanbacteria bacterium GW2011_GWA2_37_7
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.