STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KKQ67696.1Hypothetical protein. (228 aa)    
Predicted Functional Partners:
KKQ71369.1
Methyltransferase type 11.
  
 0.766
KKQ67697.1
Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
       0.729
KKQ67698.1
UvrABC system protein A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
       0.728
KKQ67701.1
Alpha amylase catalytic region.
 
 
  0.726
KKQ71400.1
Putative glycosyltransferase.
  
 
 0.718
KKQ71403.1
Glycosyl transferase family 2.
  
 
 0.718
KKQ71360.1
Glycosyl transferase family 2.
  
  0.651
KKQ70816.1
Glycosyl transferase, family 2.
  
  0.651
KKQ71408.1
Hypothetical protein.
  
  0.638
KKQ70794.1
NAD-dependent epimerase/dehydratase.
  
  0.638
Your Current Organism:
Shapirobacteria bacterium GW2011GWE23830
NCBI taxonomy Id: 1618490
Other names: C. Shapirobacteria bacterium GW2011_GWE2_38_30, Candidatus Shapirobacteria bacterium GW2011_GWE2_38_30
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