Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| KKQ24393.1 | KKQ24674.1 | US39_C0016G0006 | US39_C0014G0001 | Polymerase III, delta prime subunit protein. | Polymerase III catalytic subunit, DnaE type protein. | 0.969 |
| KKQ24393.1 | KKQ24693.1 | US39_C0016G0006 | US39_C0014G0020 | Polymerase III, delta prime subunit protein. | Excinuclease ABC, C subunit domain protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.711 |
| KKQ24393.1 | KKQ24902.1 | US39_C0016G0006 | US39_C0012G0007 | Polymerase III, delta prime subunit protein. | Polymerase III, beta subunit, DNA polymerase III subunit beta protein; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The bet [...] | 0.999 |
| KKQ24393.1 | KKQ25186.1 | US39_C0016G0006 | US39_C0010G0014 | Polymerase III, delta prime subunit protein. | Seg. | 0.844 |
| KKQ24393.1 | KKQ25563.1 | US39_C0016G0006 | US39_C0006G0001 | Polymerase III, delta prime subunit protein. | DNA-directed DNA polymerase III PolC. | 0.969 |
| KKQ24393.1 | KKQ25948.1 | US39_C0016G0006 | US39_C0003G0048 | Polymerase III, delta prime subunit protein. | Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.999 |
| KKQ24393.1 | rnhA | US39_C0016G0006 | US39_C0012G0001 | Polymerase III, delta prime subunit protein. | Ribonuclease HI, ribonuclease HI. | 0.770 |
| KKQ24674.1 | KKQ24393.1 | US39_C0014G0001 | US39_C0016G0006 | Polymerase III catalytic subunit, DnaE type protein. | Polymerase III, delta prime subunit protein. | 0.969 |
| KKQ24674.1 | KKQ24675.1 | US39_C0014G0001 | US39_C0014G0002 | Polymerase III catalytic subunit, DnaE type protein. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.653 |
| KKQ24674.1 | KKQ24693.1 | US39_C0014G0001 | US39_C0014G0020 | Polymerase III catalytic subunit, DnaE type protein. | Excinuclease ABC, C subunit domain protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.726 |
| KKQ24674.1 | KKQ24902.1 | US39_C0014G0001 | US39_C0012G0007 | Polymerase III catalytic subunit, DnaE type protein. | Polymerase III, beta subunit, DNA polymerase III subunit beta protein; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The bet [...] | 0.999 |
| KKQ24674.1 | KKQ25186.1 | US39_C0014G0001 | US39_C0010G0014 | Polymerase III catalytic subunit, DnaE type protein. | Seg. | 0.664 |
| KKQ24674.1 | KKQ25563.1 | US39_C0014G0001 | US39_C0006G0001 | Polymerase III catalytic subunit, DnaE type protein. | DNA-directed DNA polymerase III PolC. | 0.966 |
| KKQ24674.1 | KKQ25948.1 | US39_C0014G0001 | US39_C0003G0048 | Polymerase III catalytic subunit, DnaE type protein. | Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.999 |
| KKQ24674.1 | dnaX | US39_C0014G0001 | US39_C0003G0005 | Polymerase III catalytic subunit, DnaE type protein. | Polymerase III, subunit gamma and tau protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.968 |
| KKQ24674.1 | lexA | US39_C0014G0001 | US39_C0014G0016 | Polymerase III catalytic subunit, DnaE type protein. | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.713 |
| KKQ24674.1 | rnhA | US39_C0014G0001 | US39_C0012G0001 | Polymerase III catalytic subunit, DnaE type protein. | Ribonuclease HI, ribonuclease HI. | 0.707 |
| KKQ24675.1 | KKQ24674.1 | US39_C0014G0002 | US39_C0014G0001 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | Polymerase III catalytic subunit, DnaE type protein. | 0.653 |
| KKQ24693.1 | KKQ24393.1 | US39_C0014G0020 | US39_C0016G0006 | Excinuclease ABC, C subunit domain protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | Polymerase III, delta prime subunit protein. | 0.711 |
| KKQ24693.1 | KKQ24674.1 | US39_C0014G0020 | US39_C0014G0001 | Excinuclease ABC, C subunit domain protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | Polymerase III catalytic subunit, DnaE type protein. | 0.726 |
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