STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM83724.1Hypothetical protein. (252 aa)    
Predicted Functional Partners:
AKM84333.1
Protein of unknown function with transmembrane region.
    
 0.881
AKM83787.1
Methyltransferase family protein.
   
 0.846
AKM83792.1
Type 11 methyltransferase.
   
 0.846
mrdB
Rod shape-determining protein RodA, rod shape determining protein RodA.
       0.820
AKM83722.1
Hypothetical protein.
       0.778
AKM83985.1
Hypothetical protein.
   
 0.752
truB
tRNA pseudouridine synthase B, tRNA pseudouridine55 synthase.
    
  0.566
AKM84237.1
Signal peptidase I, signal peptidase I.
    
 0.550
sipW
Type I signal peptidase, signal peptidase, endoplasmic reticulum-type.
    
 0.550
AKM84027.1
Isoleucyl-tRNA synthetase, isoleucyl-tRNA synthetase.
     
 0.495
Your Current Organism:
Campbellbacteria bacterium GW2011OD13428
NCBI taxonomy Id: 1618633
Other names: C. Campbellbacteria bacterium GW2011_OD1_34_28, Candidatus Campbellbacteria bacterium GW2011_OD1_34_28, Parcubacteria (Campbellbacteria) bacterium GW2011_OD1_34_28
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.