STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM83955.1YebC/PmpR family DNA-binding regulatory protein. (176 aa)    
Predicted Functional Partners:
aspS
aspartyl-tRNA synthetase, aspartyl-tRNA synthetase.
 
  
 0.857
tyrS
tyrosyl-tRNA synthetase, tyrosyl-tRNA synthetase.
 
 
 0.819
AKM84015.1
50S ribosomal protein L19, large subunit ribosomal protein L19.
  
 
 0.707
ruvC
Crossover junction endodeoxyribonuclease RuvC, crossover junction endodeoxyribonuclease RuvC.
  
  
 0.655
AKM83970.1
Holliday junction DNA helicase RuvA, holliday junction DNA helicase RuvA.
    
 0.624
AKM83876.1
Tig, trigger factor, trigger factor.
  
  
 0.608
AKM84189.1
NusB antitermination factor, N utilization substance protein B.
  
  
 0.596
AKM84181.1
Rare lipoprotein a, rare lipoprotein A.
   
   0.593
polA
Polymerase I, DNA polymerase I protein.
       0.577
rpmF
50S ribosomal protein L32, large subunit ribosomal protein L32.
  
  
 0.550
Your Current Organism:
Campbellbacteria bacterium GW2011OD13428
NCBI taxonomy Id: 1618633
Other names: C. Campbellbacteria bacterium GW2011_OD1_34_28, Candidatus Campbellbacteria bacterium GW2011_OD1_34_28, Parcubacteria (Campbellbacteria) bacterium GW2011_OD1_34_28
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