STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM84131.1DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta. (1055 aa)    
Predicted Functional Partners:
nusA
Transcription elongation factor NusA, N utilization substance protein A.
  
 0.999
AKM84020.1
50S ribosomal protein L11, large subunit ribosomal protein L11.
 
 
 0.999
AKM84132.1
DNA-directed RNA polymerase subunit beta', DNA-directed RNA polymerase subunit beta'.
 0.999
AKM84152.1
DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit alpha.
 
 0.999
AKM84071.1
50S ribosomal protein L6, large subunit ribosomal protein L6.
  
 
 0.998
rpsJ
30S ribosomal protein S10, small subunit ribosomal protein S10.
  
 0.996
AKM84127.1
Grea/greb family elongation factor, transcription elongation factor GreA.
  
 
 0.996
AKM84064.1
30S ribosomal protein S17, small subunit ribosomal protein S17.
  
 
 0.995
AKM84069.1
30S ribosomal protein S14, small subunit ribosomal protein S14.
  
 
 0.995
nusG
Transcription antitermination protein transcriptional antiterminator NusG.
  
 0.994
Your Current Organism:
Campbellbacteria bacterium GW2011OD13428
NCBI taxonomy Id: 1618633
Other names: C. Campbellbacteria bacterium GW2011_OD1_34_28, Candidatus Campbellbacteria bacterium GW2011_OD1_34_28, Parcubacteria (Campbellbacteria) bacterium GW2011_OD1_34_28
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