STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scpBSegregation and condensation protein B, segregation and condensation protein B. (190 aa)    
Predicted Functional Partners:
scpA
Segregation and condensation protein A, segregation and condensation protein A.
 
 
 0.999
AKM84260.1
Peptidase M23b.
  
 
 0.873
AKM84173.1
Smc, chromosome segregation ATPase, chromosome segregation protein.
 
 
 0.864
AKM84170.1
Topoisomerase I, DNA topoisomerase I protein.
  
    0.823
AKM84300.1
Serine-type D-Ala-D-Ala carboxypeptidase, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6).
       0.820
rsuA
Pseudouridylate synthase specific to ribosomal small subunit, 23S rRNA pseudouridine2604 synthase.
  
  
 0.734
AKM84189.1
NusB antitermination factor, N utilization substance protein B.
  
    0.615
AKM84027.1
Isoleucyl-tRNA synthetase, isoleucyl-tRNA synthetase.
  
    0.550
AKM84222.1
Putative UDP-N-acetylmuramoylalanine--D-glutamate ligase.
  
    0.525
Your Current Organism:
Campbellbacteria bacterium GW2011OD13428
NCBI taxonomy Id: 1618633
Other names: C. Campbellbacteria bacterium GW2011_OD1_34_28, Candidatus Campbellbacteria bacterium GW2011_OD1_34_28, Parcubacteria (Campbellbacteria) bacterium GW2011_OD1_34_28
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.