STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsuAPseudouridylate synthase specific to ribosomal small subunit, 23S rRNA pseudouridine2604 synthase. (237 aa)    
Predicted Functional Partners:
ine191
Ribosomal large subunit pseudouridine synthase D, 23S rRNA pseudouridine1911/1915/1917 synthase.
   
 0.890
AKM84088.1
Carbohydrate kinase PfkB, ribokinase.
    
  0.782
scpB
Segregation and condensation protein B, segregation and condensation protein B.
  
  
 0.734
xthA
Exodeoxyribonuclease III, exodeoxyribonuclease III.
  
    0.703
AKM84189.1
NusB antitermination factor, N utilization substance protein B.
  
  
 0.622
AKM84027.1
Isoleucyl-tRNA synthetase, isoleucyl-tRNA synthetase.
  
  
 0.584
polA
Polymerase I, DNA polymerase I protein.
     
 0.580
AKM84170.1
Topoisomerase I, DNA topoisomerase I protein.
  
  
 0.580
AKM84181.1
Rare lipoprotein a, rare lipoprotein A.
  
 
 0.577
AKM83779.1
TPR domain-containing protein.
  
   0.575
Your Current Organism:
Campbellbacteria bacterium GW2011OD13428
NCBI taxonomy Id: 1618633
Other names: C. Campbellbacteria bacterium GW2011_OD1_34_28, Candidatus Campbellbacteria bacterium GW2011_OD1_34_28, Parcubacteria (Campbellbacteria) bacterium GW2011_OD1_34_28
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.