STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKM84385.1DEAD/DEAH box helicase, ATP-dependent RNA helicase RhlE. (409 aa)    
Predicted Functional Partners:
fusA
fusA-3, elongation factor G, elongation factor G.
  
 0.997
rplC
Ribosomal protein L3, large subunit ribosomal protein L3.
  
 0.996
AKM84154.1
50S ribosomal protein L13, large subunit ribosomal protein L13.
  
 0.994
rplX
50S ribosomal protein L24, large subunit ribosomal protein L24.
  
 
 0.993
AKM83736.1
50S ribosomal protein L4, large subunit ribosomal protein L4.
  
 0.992
AKM84357.1
Peptidyl-prolyl cis-trans isomerase, peptidylprolyl isomerase.
  
 0.991
AKM83922.1
Polyribonucleotide nucleotidyltransferase, polyribonucleotide nucleotidyltransferase.
  
 0.990
rplJ
50S ribosomal protein L10, large subunit ribosomal protein L10.
  
 0.986
AKM84074.1
50S ribosomal protein L15, large subunit ribosomal protein L15.
  
 
 0.984
rplN
50S ribosomal protein L14, large subunit ribosomal protein L14.
  
 
 0.975
Your Current Organism:
Campbellbacteria bacterium GW2011OD13428
NCBI taxonomy Id: 1618633
Other names: C. Campbellbacteria bacterium GW2011_OD1_34_28, Candidatus Campbellbacteria bacterium GW2011_OD1_34_28, Parcubacteria (Campbellbacteria) bacterium GW2011_OD1_34_28
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