STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnyRibonuclease Y; Endoribonuclease that initiates mRNA decay. (508 aa)    
Predicted Functional Partners:
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
    
 0.816
KKT63534.1
PolyA polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
 
 0.751
KKT64097.1
GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
  
 
 0.699
KKT62469.1
Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase.
  
 
 0.699
KKT64135.1
Nucleoside diphosphate kinase; Belongs to the NDK family.
    
  0.657
KKT64052.1
Nucleoside diphosphate kinase.
    
  0.657
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
 
 0.655
KKT63122.1
Hypothetical protein.
       0.634
rnj
Putative hydrolase of the metallo-beta-lactamase superfamily; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
  
 
 0.590
KKT64182.1
DEAD/DEAH box helicase domain protein; Belongs to the DEAD box helicase family.
   
 
 0.561
Your Current Organism:
Giovannonibacteria bacterium GW2011GWA14429
NCBI taxonomy Id: 1618646
Other names: C. Giovannonibacteria bacterium GW2011_GWA1_44_29, Candidatus Giovannonibacteria bacterium GW2011_GWA1_44_29, Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA1_44_29
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