Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KKT41399.1 | KKT41400.1 | UW30_C0008G0018 | UW30_C0008G0019 | Hypothetical protein. | Plasmid stabilization system. | 0.773 |
KKT41399.1 | KKT41403.1 | UW30_C0008G0018 | UW30_C0008G0022 | Hypothetical protein. | Hypothetical protein. | 0.464 |
KKT41399.1 | KKT41404.1 | UW30_C0008G0018 | UW30_C0008G0023 | Hypothetical protein. | Hypothetical protein. | 0.459 |
KKT41399.1 | rplE | UW30_C0008G0018 | UW30_C0008G0020 | Hypothetical protein. | 50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.746 |
KKT41399.1 | rpsZ | UW30_C0008G0018 | UW30_C0008G0021 | Hypothetical protein. | Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | 0.545 |
KKT41400.1 | KKT41399.1 | UW30_C0008G0019 | UW30_C0008G0018 | Plasmid stabilization system. | Hypothetical protein. | 0.773 |
KKT41400.1 | KKT41403.1 | UW30_C0008G0019 | UW30_C0008G0022 | Plasmid stabilization system. | Hypothetical protein. | 0.464 |
KKT41400.1 | KKT41404.1 | UW30_C0008G0019 | UW30_C0008G0023 | Plasmid stabilization system. | Hypothetical protein. | 0.459 |
KKT41400.1 | rplE | UW30_C0008G0019 | UW30_C0008G0020 | Plasmid stabilization system. | 50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.746 |
KKT41400.1 | rpsZ | UW30_C0008G0019 | UW30_C0008G0021 | Plasmid stabilization system. | Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | 0.545 |
KKT41403.1 | KKT41399.1 | UW30_C0008G0022 | UW30_C0008G0018 | Hypothetical protein. | Hypothetical protein. | 0.464 |
KKT41403.1 | KKT41400.1 | UW30_C0008G0022 | UW30_C0008G0019 | Hypothetical protein. | Plasmid stabilization system. | 0.464 |
KKT41403.1 | KKT41404.1 | UW30_C0008G0022 | UW30_C0008G0023 | Hypothetical protein. | Hypothetical protein. | 0.762 |
KKT41403.1 | KKT41406.1 | UW30_C0008G0022 | UW30_C0008G0025 | Hypothetical protein. | 50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center. | 0.454 |
KKT41403.1 | rplE | UW30_C0008G0022 | UW30_C0008G0020 | Hypothetical protein. | 50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.479 |
KKT41403.1 | rplR | UW30_C0008G0022 | UW30_C0008G0026 | Hypothetical protein. | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.454 |
KKT41403.1 | rpsH | UW30_C0008G0022 | UW30_C0008G0024 | Hypothetical protein. | 30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.628 |
KKT41403.1 | rpsZ | UW30_C0008G0022 | UW30_C0008G0021 | Hypothetical protein. | Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | 0.648 |
KKT41404.1 | KKT41399.1 | UW30_C0008G0023 | UW30_C0008G0018 | Hypothetical protein. | Hypothetical protein. | 0.459 |
KKT41404.1 | KKT41400.1 | UW30_C0008G0023 | UW30_C0008G0019 | Hypothetical protein. | Plasmid stabilization system. | 0.459 |
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