STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KKW11834.1Lysyl-tRNA synthetase LysS. (484 aa)    
Predicted Functional Partners:
KKW12747.1
Glutamate-tRNA ligase 2.
  
 0.999
KKW11840.1
Prolyl-tRNA synthetase.
  
 0.999
KKW12026.1
Isoleucine-tRNA ligase.
  
 0.999
KKW12027.1
Arginine-tRNA ligase.
  
 0.999
KKW12137.1
Leucine-tRNA ligase.
  
 0.999
KKW12292.1
Methionine-tRNA ligase.
  
 0.999
KKW12345.1
Methionyl-tRNA synthetase.
   
 0.999
KKW11832.1
Serine-tRNA ligase.
  
 
 0.928
KKW12371.1
50S ribosomal protein L18.
  
 
  0.920
KKW11862.1
Metal dependent phosphohydrolase.
      0.917
Your Current Organism:
Jorgensenbacteria bacterium GW2011GWB1499
NCBI taxonomy Id: 1618664
Other names: C. Jorgensenbacteria bacterium GW2011_GWB1_49_9, Candidatus Jorgensenbacteria bacterium GW2011_GWB1_49_9, Parcubacteria (Jorgensenbacteria) bacterium GW2011_GWB1_49_9
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