STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KKW11884.1Hypothetical protein. (339 aa)    
Predicted Functional Partners:
KKW12430.1
L-isoaspartyl protein carboxyl methyltransferase.
      0.807
KKW11883.1
DNA-directed RNA polymerase subunit beta.
       0.805
KKW12104.1
Thymidylate synthase.
  
 
  0.781
KKW11890.1
GtrA family protein.
       0.617
KKW12134.1
TatD-related deoxyribonuclease.
      0.599
KKW11885.1
Rod shape-determining protein.
     
 0.591
KKW11882.1
DNA-directed RNA polymerase subunit beta'.
       0.546
KKW11886.1
Hypothetical protein.
  
    0.540
KKW12223.1
Signal peptidase I.
  
 
  0.514
KKW11887.1
Triosephosphate isomerase.
       0.513
Your Current Organism:
Jorgensenbacteria bacterium GW2011GWB1499
NCBI taxonomy Id: 1618664
Other names: C. Jorgensenbacteria bacterium GW2011_GWB1_49_9, Candidatus Jorgensenbacteria bacterium GW2011_GWB1_49_9, Parcubacteria (Jorgensenbacteria) bacterium GW2011_GWB1_49_9
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