STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KKT00929.1Aminodeoxychorismate lyase. (308 aa)    
Predicted Functional Partners:
KKT00933.1
Alanine-tRNA ligase.
  
    0.800
KKT00928.1
Hypothetical protein.
       0.794
KKT00934.1
Hypothetical protein.
  
  
 0.779
mnmA
tRNA-specific 2-thiouridylase MnmA; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.774
KKT00932.1
Mg2+ transporter-C family protein.
       0.773
KKT00930.1
Exonuclease RNase T and DNA polymerase III.
       0.766
pcm
Protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.
      0.764
KKT01123.1
Thymidylate synthase.
  
 
  0.692
KKS99230.1
Type 11 methyltransferase.
    
  0.685
KKT00927.1
RNA polymerase sigma factor.
       0.644
Your Current Organism:
Nomurabacteria bacterium GW2011GWA24315
NCBI taxonomy Id: 1618738
Other names: C. Nomurabacteria bacterium GW2011_GWA2_43_15, Candidatus Nomurabacteria bacterium GW2011_GWA2_43_15, Parcubacteria (Nomurabacteria) bacterium GW2011_GWA2_43_15
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