Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KKT93643.1 | KKT93965.1 | UW94_C0005G0128 | UW94_C0003G0141 | Hypothetical protein. | 30S ribosomal protein S13. | 0.999 |
KKT93643.1 | KKT93967.1 | UW94_C0005G0128 | UW94_C0003G0143 | Hypothetical protein. | 30S ribosomal protein S4. | 0.999 |
KKT93643.1 | KKT93969.1 | UW94_C0005G0128 | UW94_C0003G0145 | Hypothetical protein. | 50S ribosomal protein L17. | 0.999 |
KKT93643.1 | rplJ | UW94_C0005G0128 | UW94_C0006G0011 | Hypothetical protein. | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.532 |
KKT93643.1 | rplM | UW94_C0005G0128 | UW94_C0003G0146 | Hypothetical protein. | Hypothetical protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
KKT93643.1 | rplU | UW94_C0005G0128 | UW94_C0006G0046 | Hypothetical protein. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.999 |
KKT93643.1 | rpsI | UW94_C0005G0128 | UW94_C0003G0147 | Hypothetical protein. | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.999 |
KKT93643.1 | rpsK | UW94_C0005G0128 | UW94_C0003G0142 | Hypothetical protein. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
KKT93965.1 | KKT93643.1 | UW94_C0003G0141 | UW94_C0005G0128 | 30S ribosomal protein S13. | Hypothetical protein. | 0.999 |
KKT93965.1 | KKT93967.1 | UW94_C0003G0141 | UW94_C0003G0143 | 30S ribosomal protein S13. | 30S ribosomal protein S4. | 0.999 |
KKT93965.1 | KKT93969.1 | UW94_C0003G0141 | UW94_C0003G0145 | 30S ribosomal protein S13. | 50S ribosomal protein L17. | 0.999 |
KKT93965.1 | frr | UW94_C0003G0141 | UW94_C0004G0012 | 30S ribosomal protein S13. | Ribosome-recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | 0.990 |
KKT93965.1 | rplJ | UW94_C0003G0141 | UW94_C0006G0011 | 30S ribosomal protein S13. | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.999 |
KKT93965.1 | rplL | UW94_C0003G0141 | UW94_C0006G0012 | 30S ribosomal protein S13. | 50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.999 |
KKT93965.1 | rplM | UW94_C0003G0141 | UW94_C0003G0146 | 30S ribosomal protein S13. | Hypothetical protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
KKT93965.1 | rplU | UW94_C0003G0141 | UW94_C0006G0046 | 30S ribosomal protein S13. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.999 |
KKT93965.1 | rpsI | UW94_C0003G0141 | UW94_C0003G0147 | 30S ribosomal protein S13. | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.999 |
KKT93965.1 | rpsK | UW94_C0003G0141 | UW94_C0003G0142 | 30S ribosomal protein S13. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
KKT93967.1 | KKT93643.1 | UW94_C0003G0143 | UW94_C0005G0128 | 30S ribosomal protein S4. | Hypothetical protein. | 0.999 |
KKT93967.1 | KKT93965.1 | UW94_C0003G0143 | UW94_C0003G0141 | 30S ribosomal protein S4. | 30S ribosomal protein S13. | 0.999 |
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