STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KKT47396.1Peptide chain release factor 1. (346 aa)    
Predicted Functional Partners:
KKT46403.1
Ribosome-recycling factor.
  
 
 0.980
KKT47395.1
Release factor glutamine methyltransferase.
 
 
 0.973
KKT46153.1
50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
 
 
 0.956
KKT46151.1
30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
 
 
 0.952
rplC
50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
 
 
 
 0.951
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
 
 
 0.951
KKT46352.1
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
 
 
 0.950
rpsG
30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
  
 
 0.949
rplI
50S ribosomal protein L9; Binds to the 23S rRNA.
   
 
 0.949
rpmA
50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.947
Your Current Organism:
Parcubacteria group bacterium GW2011GWC24417
NCBI taxonomy Id: 1618929
Other names: P. group bacterium GW2011_GWC2_44_17, Parcubacteria group bacterium GW2011_GWC2_44_17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.