Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APT92737.1Amino acid-binding ACT domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)    
Predicted Functional Partners:
APT91706.1
tRNA adenosine deaminase-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.751
APT93376.1
Universal stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.750
APT93812.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.749
APT93144.1
Ribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.742
APT93143.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.736
APT92478.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.701
APT92011.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.692
APT92044.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.691
APT93600.1
Glutaredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.687
APT92809.1
Translocase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.686
Your Current Organism:
Corynebacterium phocae
NCBI taxonomy Id: 161895
Other names: C. phocae, CCUG 38205, CIP 105741, DSM 44612, JCM 12105, strain M408/89/1
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