Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
APT92778.1ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)    
Predicted Functional Partners:
APT92776.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.849
APT92775.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.810
APT93444.1
Multicopper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.762
APT93732.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.746
APT92777.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.670
APT93733.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.640
APT91732.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.585
APT92790.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.558
APT93615.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.545
APT93699.1
ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.538
Your Current Organism:
Corynebacterium phocae
NCBI taxonomy Id: 161895
Other names: C. phocae, CCUG 38205, CIP 105741, DSM 44612, JCM 12105, strain M408/89/1
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