Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
APT93102.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (151 aa)    
Predicted Functional Partners:
APT93646.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.721
APT93101.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.718
manB
Phosphomannomutase; Converts mannose-6-phosphate to mannose-1-phosphate; the resulting product is then converted to GDP-mannose by ManC which is then used in the synthesis of mannose-containing glycoconjugates that are important for mediating entry into host cells; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.716
APT92743.1
Methionine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.678
APT93683.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.662
APT93028.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.660
APT93085.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.654
APT93017.1
Glutaredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.604
APT93106.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.603
APT93763.1
Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.601
Your Current Organism:
Corynebacterium phocae
NCBI taxonomy Id: 161895
Other names: C. phocae, CCUG 38205, CIP 105741, DSM 44612, JCM 12105, strain M408/89/1
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