Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AKE38868.1 | AKE38870.1 | UL81_04475 | UL81_04485 | Extracellular solute-binding protein, family 5. | Hypothetical protein. | 0.812 |
AKE38868.1 | AKE38873.1 | UL81_04475 | UL81_04500 | Extracellular solute-binding protein, family 5. | 23S RNA-specific pseudouridylate synthase. | 0.762 |
AKE38868.1 | mshB | UL81_04475 | UL81_04480 | Extracellular solute-binding protein, family 5. | Putative LmbE-like protein. | 0.834 |
AKE38868.1 | typA | UL81_04475 | UL81_04470 | Extracellular solute-binding protein, family 5. | GTP-binding protein TypA/BipA. | 0.723 |
AKE38870.1 | AKE38868.1 | UL81_04485 | UL81_04475 | Hypothetical protein. | Extracellular solute-binding protein, family 5. | 0.812 |
AKE38870.1 | AKE38873.1 | UL81_04485 | UL81_04500 | Hypothetical protein. | 23S RNA-specific pseudouridylate synthase. | 0.706 |
AKE38870.1 | mshB | UL81_04485 | UL81_04480 | Hypothetical protein. | Putative LmbE-like protein. | 0.812 |
AKE38870.1 | typA | UL81_04485 | UL81_04470 | Hypothetical protein. | GTP-binding protein TypA/BipA. | 0.615 |
AKE38873.1 | AKE38868.1 | UL81_04500 | UL81_04475 | 23S RNA-specific pseudouridylate synthase. | Extracellular solute-binding protein, family 5. | 0.762 |
AKE38873.1 | AKE38870.1 | UL81_04500 | UL81_04485 | 23S RNA-specific pseudouridylate synthase. | Hypothetical protein. | 0.706 |
AKE38873.1 | mshB | UL81_04500 | UL81_04480 | 23S RNA-specific pseudouridylate synthase. | Putative LmbE-like protein. | 0.710 |
AKE38873.1 | typA | UL81_04500 | UL81_04470 | 23S RNA-specific pseudouridylate synthase. | GTP-binding protein TypA/BipA. | 0.622 |
der | guaA | UL81_05750 | UL81_02175 | Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | 0.439 |
der | rplA | UL81_05750 | UL81_01610 | Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.639 |
der | typA | UL81_05750 | UL81_04470 | Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | GTP-binding protein TypA/BipA. | 0.611 |
gltB | guaA | UL81_05795 | UL81_02175 | Glutamate synthase family protein. | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | 0.930 |
gltB | typA | UL81_05795 | UL81_04470 | Glutamate synthase family protein. | GTP-binding protein TypA/BipA. | 0.791 |
guaA | der | UL81_02175 | UL81_05750 | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.439 |
guaA | gltB | UL81_02175 | UL81_05795 | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | Glutamate synthase family protein. | 0.930 |
guaA | infC | UL81_02175 | UL81_05545 | GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP. | Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 0.436 |
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