STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJI77674.1Selenocysteine lyase; PFAM: Aminotransferase class-V. (403 aa)    
Predicted Functional Partners:
nifU
PFAM: NifU-like N terminal domain; TIGRFAM: SUF system FeS assembly protein, NifU family.
  
 
 0.913
AJI77673.1
ABC-type polysaccharide/polyol phosphate export systems, permease component; PFAM: ABC-2 type transporter.
 
     0.742
rfbE
ABC-type polysaccharide/polyol phosphate transport system, ATPase component; PFAM: ABC transporter.
 
     0.735
yurY
PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC.
  
  
 0.729
sufD
Iron-regulated ABC transporter permease protein SufD; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufD.
  
 
 0.695
AJI78877.1
Iron-regulated ABC transporter membrane component SufB; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufB.
  
 
 0.690
AJI79317.1
Hypothetical protein.
  
     0.656
AJI78145.1
Hypothetical protein.
  
     0.651
AJI78612.1
PFAM: Protein of unknown function (DUF402).
  
     0.634
AJI78794.1
Hypothetical protein.
  
    0.628
Your Current Organism:
Corynebacterium singulare
NCBI taxonomy Id: 161899
Other names: C. singulare, CCUG 37330, CIP 105491, DSM 44357, IBS B52218, IFO 16162, JCM 10385, NBRC 16162
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.